Maize chip-seq
Web6 mrt. 2024 · From the five maize TFs for which ChIP-seq data are available, only P1 and FEA4 were identified in our Y1H screens (Figure 6 B). In the Y1H assays, P1 recognized … WebProduct Highlights. The MaizeSNP50 DNA Analysis Kit enables the interrogation of genetic variation across maize lines. Illumina developed this BeadChip array in collaboration with …
Maize chip-seq
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WebMaize (Zea mays L. ssp. mays) was domesticated from the grass teosinte in Central America1 over the last ~10,000 years. It is an important model organism for fundamental … Web1 aug. 2024 · The integration of ChIP-seq H3K27me3 profiles with RNA-seq and WGBS-seq data sets suggested that H3K27me3 may play diverse roles in regulation chromatin …
Web16 jun. 2024 · Maize ears and tassels are two separate types of inflorescence which are initiated by similar developmental processes but gradually develop distinct architectures. … Web23 aug. 2024 · Through ChIP seq, RNA seq, hormone and sugar measurements on 1 mm axillary bud tissue, we identify the genetic pathways putatively regulated by TB1. These …
WebChIP-seq for ANAC055 and ATHB5 used the same YPET-tagging strategy as the ABI5 YPET experiment. Genome-wide comparison of the three TFs showed that DAP-seq peaks captured significant fractions ... Reads were mapped to the TAIR10 genome for Arabidopsis and B73_v2 for maize. DAP-seq peaks were called by the GEM peak caller (Guo et al., … WebWe used ChIP-seq to determine the binding profiles of 104 TF expressed in the maize leaf. With this large dataset, we could reconstruct a transcription regulatory network that …
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WebIt has a large genome of about 2.4 gigabases with a haploid chromosome number of 10 (2n=2x=20) [2-4]. Maize is distinguished from other grasses in that its genome arose from an ancient tetraploidy event unique to its lineage. This sequence corresponds to inbred line B73. Taxonomy ID 4577. Data source nam-genomes. More information and statistics. dr pham in houstonWeb7 jun. 2024 · They perform H3K27me3 ChIP-seq on 12 days after pollination endosperm from hybrids Mo17xB73 and B73xMo17, which is available as 36bp single end reads. … dr pham girrawheenWeb18 mrt. 2024 · Paper-Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors, 2024, NC .ChIP peaks at GSE137972. The ChIP data is in ConnecTF also. For ATAC, H3K27me3, H3K9ac, Pol2 ChIP, data at SRP183225. Input controls: SRR12321692 and SRR12321693 Maize MOA-Seq in ear. dr pham houstonWeb20 mei 2024 · Maize is a classic genetic model, known for its excellent chromosome cytology and rich history of transposon research [ 1 ]. Transposons make up the majority of the maize genome [ 2 ], and their accumulation over millions of years has driven genes far apart from each other and separated genes from their regulatory sequences [ 3 ]. college football paul finebaumWeb18 mrt. 2024 · Paper-Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors, 2024, NC .ChIP peaks at GSE137972. The ChIP data is in … dr. pham internal medicineWeb22 feb. 2024 · By leveraging mRNA sequencing (RNA-seq) in kn1 loss-of-function mutant immature ears and tassels and SAMs with chromatin immunoprecipitation paired … college football penalty statsWeb11 apr. 2024 · Ribulose–1,5–bisphosphate carboxylase/oxygenase (Rubisco) is the rate–limiting enzyme for photosynthesis. Rubisco activase (RCA) can regulate the Rubisco activation state, influencing Rubisco activity and photosynthetic rate. We obtained transgenic maize plants that overproduced rice RCA (OsRCAOE) and evaluated photosynthesis in … college football penalty chart